Installation

Conda

Install the latest released version using :

conda create -c bioconda -c conda-forge -n proBait "python=3.11"

Followed by the following commands to install proBait and its dependencies:

conda activate proBait
conda install -c bioconda -c conda-forge biopython plotly pandas datapane minimap2 mmseqs2
pip3 install probait

If you’re having issues installing proBait through conda, please verify that you are using conda>=22.11, and enable the libmamba solver, which may speed up the installation process.

Python dependencies

• biopython >=1.83

• plotly >=5.22.0

• pandas >=1.5.3

• datapane >=0.17.0

Note

These dependencies are defined in the requirements file and should be automatically installed when using conda or pip.

Other dependencies

• minimap2

• MMseqs2

Important

Installation through conda should take care of all dependencies. If you install through pip you need to ensure that you have minimap2 and MMseqs2 installed.